Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
LGG rs11924403 chr3:153669615 C/G 0 509 22.58 22.3 0.23 KM Plot
LGG rs11924531 chr3:153669781 C/T 0 509 22.47 22.78 0.23 KM Plot
LGG rs11924564 chr3:153664075 C/T 0 508 22.58 22.73 0.23 KM Plot
LGG rs11926043 chr3:153675972 C/T 0 506 22.1 22.73 0.23 KM Plot
LGG rs11926192 chr3:153676303 G/A 0 506 22.37 22.3 0.23 KM Plot
LGG rs1193334 chr7:127612009 G/A 1.45E-5 508 21.7 26.4 14.32 KM Plot
LGG rs1193337 chr7:127619502 C/A 1.42E-5 509 21.77 26.4 14.32 KM Plot
LGG rs11959119 chr5:92937146 A/T 1.76E-5 509 19.23 23.53 22.58 KM Plot
LGG rs11977012 chr7:127312096 G/A 7.97E-8 507 21.77 25.77 9.73 KM Plot
LGG rs11977915 chr7:127283170 C/T 9.37E-6 506 21.6 26.4 12.4 KM Plot
LGG rs11980318 chr7:127283406 A/T 1.27E-5 509 21.63 26.4 11.07 KM Plot
LGG rs11995302 chr8:323502 G/A 7.31E-5 504 22.78 21.7 21.3 KM Plot
LGG rs12003960 chr9:20477061 C/T 1.44E-5 509 23.52 20.13 NA KM Plot
LGG rs12050573 chr15:45198008 A/G 0.0001 498 23.52 21.3 18.63 KM Plot
LGG rs12050579 chr15:45198036 G/A 0.0001 498 23.52 21.3 18.63 KM Plot